griffithlab / griffithlab/pVACtools
Output a visual representation of the graph after all spacers have been tested
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
This may aid in manually identifying which peptides could be removed or which peptides should be clipped or have more flanking amino acids added.
https://networkx.org/documentation/stable/reference/drawing.html has some notes about packages that would allow us to draw the directed graph created in pVACvector.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the pVACvector code that creates the directed graph and runs all spacer tests. Review the NetworkX drawing documentation linked in the issue and determine how the graph should be rendered. Done means a visual representation is produced after spacer testing so peptides and their flanking sequences can be inspected manually.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100