TF2 error - Failure (`test_inference.R:351`): numerical issues are handled in mcmc
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Description
``` r
devtools::load_all(".")
#> ℹ Loading greta
#> ℹ Initialising python and checking dependencies, this may take a moment.
#>
#> ✔ Initialising python and checking dependencies ... done!
#> Loaded Tensorflow version 2.10.0
source(here::here("tests", "testthat", "helpers.R"))
alpha <- normal(0, 1)
x <- matrix(rnorm(6), 3, 2)
y <- t(rnorm(3))
z <- alpha * x
sigma <- z %*% t(z)
distribution(y) <- multivariate_normal(zeros(1, 3), sigma)
m <- model(alpha)
# running with bursts should error informatively
# expect_snapshot_error(
draws <- mcmc(m, verbose = FALSE)
# but no errors!
# )
```
Created on 2022-12-09 with [reprex v2.0.2](https://reprex.tidyverse.org)
Session info
``` r
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.2.1 (2022-06-23)
#> os macOS Monterey 12.3.1
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Australia/Perth
#> date 2022-12-09
#> pandoc 2.19.2 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> ! package * version date (UTC) lib source
#> abind 1.4-5 2016-07-21 [1] CRAN (R 4.2.0)
#> backports 1.4.1 2021-12-13 [1] CRAN (R 4.2.0)
#> base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.2.0)
#> brio 1.1.3 2021-11-30 [1] CRAN (R 4.2.0)
#> cachem 1.0.6 2021-08-19 [1] CRAN (R 4.2.0)
#> callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.0)
#> cli 3.4.1 2022-09-23 [1] CRAN (R 4.2.0)
#> coda 0.19-4 2020-09-30 [1] CRAN (R 4.2.0)
#> codetools 0.2-18 2020-11-04 [1] CRAN (R 4.2.1)
#> crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0)
#> desc 1.4.2 2022-09-08 [1] CRAN (R 4.2.0)
#> devtools 2.4.5 2022-10-11 [1] CRAN (R 4.2.0)
#> digest 0.6.30 2022-10-18 [1] CRAN (R 4.2.0)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0)
#> evaluate 0.18 2022-11-07 [1] CRAN (R 4.2.0)
#> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.0)
#> fs 1.5.2 2021-12-08 [1] CRAN (R 4.2.0)
#> future 1.29.0 2022-11-06 [1] CRAN (R 4.2.0)
#> globals 0.16.2 2022-11-21 [1] CRAN (R 4.2.1)
#> glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.0)
#> VP greta * 0.4.2.9000 2022-09-08 [?] CRAN (R 4.2.0) (on disk 0.4.3)
#> here 1.0.1 2020-12-13 [1] CRAN (R 4.2.0)
#> highr 0.9 2021-04-16 [1] CRAN (R 4.2.0)
#> hms 1.1.2 2022-08-19 [1] CRAN (R 4.2.0)
#> htmltools 0.5.3 2022-07-18 [1] CRAN (R 4.2.0)
#> htmlwidgets 1.5.4 2021-09-08 [1] CRAN (R 4.2.0)
#> httpuv 1.6.6 2022-09-08 [1] CRAN (R 4.2.0)
#> jsonlite 1.8.3 2022-10-21 [1] CRAN (R 4.2.0)
#> knitr 1.41 2022-11-18 [1] CRAN (R 4.2.0)
#> later 1.3.0 2021-08-18 [1] CRAN (R 4.2.0)
#> lattice 0.20-45 2021-09-22 [1] CRAN (R 4.2.1)
#> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.0)
#> listenv 0.8.0 2019-12-05 [1] CRAN (R 4.2.0)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0)
#> Matrix 1.5-3 2022-11-11 [1] CRAN (R 4.2.0)
#> memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0)
#> mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
#> miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.0)
#> parallelly 1.32.1 2022-07-21 [1] CRAN (R 4.2.0)
#> pkgbuild 1.4.0 2022-11-27 [1] CRAN (R 4.2.1)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0)
#> pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.2.0)
#> png 0.1-8 2022-11-29 [1] CRAN (R 4.2.0)
#> prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.0)
#> processx 3.8.0 2022-10-26 [1] CRAN (R 4.2.0)
#> profvis 0.3.7 2020-11-02 [1] CRAN (R 4.2.0)
#> progress 1.2.2 2019-05-16 [1] CRAN (R 4.2.0)
#> promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0)
#> ps 1.7.2 2022-10-26 [1] CRAN (R 4.2.0)
#> purrr 0.3.5 2022-10-06 [1] CRAN (R 4.2.0)
#> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.2.0)
#> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.2.0)
#> R.oo 1.25.0 2022-06-12 [1] CRAN (R 4.2.0)
#> R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.2.0)
#> R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0)
#> Rcpp 1.0.9 2022-07-08 [1] CRAN (R 4.2.0)
#> remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.0)
#> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.2.0)
#> reticulate 1.26 2022-08-31 [1] CRAN (R 4.2.0)
#> rlang 1.0.6 2022-09-24 [1] CRAN (R 4.2.0)
#> rmarkdown 2.18 2022-11-09 [1] CRAN (R 4.2.0)
#> rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0)
#> rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.0)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0)
#> shiny 1.7.3 2022-10-25 [1] CRAN (R 4.2.0)
#> stringi 1.7.8 2022-07-11 [1] CRAN (R 4.2.0)
#> stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.0)
#> styler 1.8.1 2022-11-07 [1] CRAN (R 4.2.0)
#> tensorflow 2.9.0 2022-05-21 [1] CRAN (R 4.2.0)
#> testthat * 3.1.5 2022-10-08 [1] CRAN (R 4.2.0)
#> tfautograph 0.3.2 2021-09-17 [1] CRAN (R 4.2.0)
#> tfruns 1.5.1 2022-09-05 [1] CRAN (R 4.2.0)
#> urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.2.0)
#> usethis 2.1.6 2022-05-25 [1] CRAN (R 4.2.0)
#> vctrs 0.5.1 2022-11-16 [1] CRAN (R 4.2.0)
#> whisker 0.4 2019-08-28 [1] CRAN (R 4.2.0)
#> withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0)
#> xfun 0.35 2022-11-16 [1] CRAN (R 4.2.0)
#> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0)
#> yaml 2.3.6 2022-10-18 [1] CRAN (R 4.2.0)
#> yesno 0.1.2 2020-07-10 [1] CRAN (R 4.2.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library
#>
#> V ── Loaded and on-disk version mismatch.
#> P ── Loaded and on-disk path mismatch.
#>
#> ─ Python configuration ───────────────────────────────────────────────────────
#> python: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/bin/python
#> libpython: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/libpython3.8.dylib
#> pythonhome: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2:/Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2
#> version: 3.8.13 | packaged by conda-forge | (default, Mar 25 2022, 06:05:16) [Clang 12.0.1 ]
#> numpy: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/python3.8/site-packages/numpy
#> numpy_version: 1.23.2
#> tensorflow: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/python3.8/site-packages/tensorflow
#>
#> NOTE: Python version was forced by use_python function
#>
#> ──────────────────────────────────────────────────────────────────────────────
```
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