greenelab / greenelab/tribe

Turn commands in 'load_ortanisms_and_genes_to_db.sh' script into for-loops, to make it shorter and more maintainable.

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#9 3 comments 0 reactions 0 assignees View on GitHub
backlog
Dominant language
Python
Stars
3
Forks
3
PR merge metrics
No merged PRs in 30d

Description

This was brought up in https://github.com/greenelab/tribe/pull/8, but was proving to be too involved for the scope of the pull request.

Contributor guide

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Research direction

Open load_ortanisms_and_genes_to_db.sh and review the repeated commands described in this issue, then read the related discussion in pull request #8 for context. Refactor the commands into for-loops while keeping the script’s behavior unchanged and making it shorter and more maintainable.

Written by the indexing model from the issue text.

Assessment

Tech stack
shell
Domain
tooling
Issue type
Refactor
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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