greenelab / greenelab/mutation-fn

QC copy number data

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Jupyter Notebook
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Description

https://github.com/greenelab/mutation-fn/pull/3#discussion_r785038890

We should generally take a closer look at this data - e.g. what is the distribution of copy number counts across samples? Does this look like what we would expect given previously observed trends in various cancer types?

Contributor guide

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Research direction

Start with the linked pull-request discussion and inspect the copy number data used there. Characterize the distribution of copy number counts across samples and compare it with expected trends across cancer types; the work is complete when these QC findings are recorded and any data-quality concern is resolved.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook
Domain
data
Issue type
Bug
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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