Cancer type classification refactoring
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Description
See Milton's review comments in #4:
https://github.com/greenelab/mpmp/pull/4#discussion_r546730866
https://github.com/greenelab/mpmp/pull/4#discussion_r546734995
https://github.com/greenelab/mpmp/pull/4#discussion_r546738217
https://github.com/greenelab/mpmp/pull/4#discussion_r546743539
All of these should be fairly straightforward changes, that shouldn't affect the results but should improve code clarity/maintainability.
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