greenelab / greenelab/buddi_analysis
Why Writing out data to use in CIBERSORTx?
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Description
One of the sections prepares and writes out the single-cell data in a format suitable for use in CIBERSORTx. CIBERSORTx is a tool for estimating cell-type proportions in bulk tissues using single-cell data as a reference. The data is saved in a pickle file, which can be later used for downstream analyses in cell [25] of part II of this tutorial.
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