greenelab / greenelab/buddi_analysis
scanpy ImportError
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Description
- If an **ImportError** with the message "symbol not found in flat namespace ‘_H5Lget_info’" is encountered when trying to use the 'tables' library, it suggests that the library might not be installed in the correct location (the virtual environment that was created to install BuDDI) like in my case, I had to install scanpy in tis specific .venv folder:
.venv % env HDF5_DIR=/opt/homebrew/opt/hdf5 pip3 install tables
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