[Bug] SPM can not inject dependencies when close all Cocoapods switch

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### [REQUIRED] Please fill in the following fields:

* Unity editor version: 2022.3.62.f2
* External Dependency Manager version: 1.2.187
* Source you installed EDM4U: .unitypackage
* Features in External Dependency Manager in use: iOS Resolver
* Plugins SDK in use: Firebase, Facebook
* Platform you are using the Unity editor on: Mac

### [REQUIRED] Please describe the issue here:
(Please list the full steps to reproduce the issue. Include device logs, Unity logs, and stack traces if available.)
There are two bugs I think.
1. If I close any cocoapods switch in the iOS settings panel（picture below）, when the XCode project is built, no SPM dependencies will be injected.

If I change the options in the red box to the ones shown in the picture below, it works, I think this modification is unnecessary.

2. If I export an XCode project in the same directory and select "append", the SPM dependencies will be continuously accumulated in the exported XCode project. I think there should be a deduplication operation here.

#### Please answer the following, if applicable:
What's the issue repro rate? (eg 100%, 1/5 etc)
100%

What happened? How can we make the problem occur?
This could be a description, log/console output, etc.

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