google / google/clusterfuzz

reproduce tool setup failed due to scipy compilation failure

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#2,391 1 comment 0 reactions 1 assignee Claimed by @oliverchang View on GitHub
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Description

$ ./local/install_deps.bash
...
[pipenv.exceptions.InstallError]: Warning: Unused variable ‘t5’ declared at (1) [-Wunused-variable]
[pipenv.exceptions.InstallError]: gfortran:f77: scipy/sparse/linalg/eigen/arpack/ARPACK/UTIL/zvout.f
[pipenv.exceptions.InstallError]: gfortran:f77: scipy/sparse/linalg/eigen/arpack/ARPACK/UTIL/dmout.f
[pipenv.exceptions.InstallError]: gfortran:f77: scipy/sparse/linalg/eigen/arpack/ARPACK/UTIL/svout.f
[pipenv.exceptions.InstallError]: gfortran:f77: /tmp/pip-install-7rd53kmq/scipy_382059d558724d20a13851c42b46f8d1/scipy/_build_utils/src/wrap_dummy_g77_abi.f
[pipenv.exceptions.InstallError]: error: Command "/usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -Iscipy/sparse/linalg/eigen/arpack/ARPACK/SRC -I/usr/local/google/home/szager/.local/share/virtualenvs/clusterfuzz-gwyRvnDX/lib/python3.9/site-packages/numpy/core/include -c -c scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaup2.f -o build/temp.linux-x86_64-3.9/scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaup2.o" failed with exit status 1
[pipenv.exceptions.InstallError]: ----------------------------------------
[pipenv.exceptions.InstallError]: ERROR: Command errored out with exit status 1: /usr/local/google/home/szager/.local/share/virtualenvs/clusterfuzz-gwyRvnDX/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-7rd53kmq/scipy_382059d558724d20a13851c42b46f8d1/setup.py'"'"'; __file__='"'"'/tmp/pip-install-7rd53kmq/scipy_382059d558724d20a13851c42b46f8d1/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-55xdts22/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/google/home/szager/.local/share/virtualenvs/clusterfuzz-gwyRvnDX/include/site/python3.9/scipy Check the logs for full command output.
ERROR: Couldn't install package: scipy
Package installation failed...
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