google-deepmind / google-deepmind/deepmind-research
GTEx tissues mapping
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Description
Hi,
In the paper it is stated:
“Signed linkage disequilibrium profile (SLDP) regression is a technique developed to measure the genome-wide statistical concordance between signed variant annotations (such as our model predictions) and GWAS summary statistics (such as GTEx eQTLs) while accounting for linkage disequilibrium. For 379 of 648 (59.4%) CAGE datasets, the maximum SLDP Z-score across GTEx tissues (representing the most likely closest sample match) increased for Enformer predictions relative to Basenji2.”
I would kindly ask if it is possible to share the final mapping you have adopted to link the enformer predicted tracks to the GTEx tissues. It would be important to use the same mapping you adopted to be consistent with your work.
Thank you in advance for your help!
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