google-deepmind / google-deepmind/alphafold
An error free installation package
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- Python
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Description
I used this installation environment without any errors throughout the process, and you can also do the same. I am using cuda11 and cudnn8.2, python version 3.8。jax_releases can found here https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
in addition,it is necessary to add export XLA_FLAGS="--xla_gpu_force_compilation_parallelism=1" in run_alphafold.sh after 162 line
absl-py==2.1.0
asttokens==2.4.1
astunparse==1.6.3
backcall==0.2.0
biopython==1.79
Bottleneck==1.3.7
Brotli==1.0.9
cachetools==5.2.0
certifi==2024.2.2
charset-normalizer==2.1.1
chex==0.0.7
comm==0.2.2
contextlib2==21.6.0
cycler==0.11.0
debugpy==1.8.1
decorator==5.1.1
dm-haiku==0.0.9
dm-tree==0.1.6
docker==5.0.0
etils==0.7.1
executing==2.0.1
flatbuffers==1.12
fonttools==4.34.4
gast==0.4.0
google-auth==2.11.0
google-auth-oauthlib==0.4.6
google-pasta==0.2.0
grpcio==1.34.1
h5py==3.1.0
idna==3.4
immutabledict==2.0.0
importlib-metadata==4.12.0
importlib-resources==5.9.0
ipykernel==6.29.4
ipython==8.12.3
jax==0.3.25
jaxlib==0.3.25+cuda11.cudnn82
jedi==0.19.1
jmp==0.0.4
jupyter_client==8.6.1
jupyter_core==5.7.2
keras==2.9.0
keras-nightly==2.5.0.dev2021032900
Keras-Preprocessing==1.1.2
kiwisolver==1.4.4
libclang==14.0.6
Markdown==3.4.1
MarkupSafe==2.1.1
matplotlib==3.5.2
matplotlib-inline==0.1.7
ml-collections==0.1.0
ml-dtypes==0.2.0
mock==4.0.3
nest-asyncio==1.6.0
nnlib==0.1
numexpr==2.8.4
numpy==1.22.4
nvidia-htop==1.0.5
oauthlib==3.2.0
OpenMM==7.5.1
opt-einsum==3.3.0
packaging==23.2
pandas==2.0.3
parso==0.8.4
pdbfixer==1.7
pexpect==4.9.0
pickleshare==0.7.5
Pillow==9.2.0
pip==23.0.1
platformdirs==3.10.0
pooch==1.7.0
prompt-toolkit==3.0.43
protobuf==3.19.4
psutil==5.9.8
ptyprocess==0.7.0
pure-eval==0.2.2
pyasn1==0.4.8
pyasn1-modules==0.2.8
Pygments==2.17.2
pyparsing==3.0.9
PySocks==1.7.1
python-dateutil==2.8.2
pytz==2023.3.post1
PyYAML==6.0
pyzmq==26.0.0
requests==2.31.0
requests-oauthlib==1.3.1
rsa==4.9
scipy==1.7.0
setuptools==65.6.3
six==1.16.0
stack-data==0.6.3
tabulate==0.8.10
tensorboard==2.9.1
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.1
tensorflow==2.9.0
tensorflow-estimator==2.9.0
tensorflow-io-gcs-filesystem==0.26.0
termcolor==1.1.0
toolz==0.12.0
tornado==6.4
traitlets==5.14.2
typing-extensions==3.7.4.3
tzdata==2023.3
urllib3==2.1.0
wcwidth==0.2.13
websocket-client==1.3.3
Werkzeug==2.2.2
wheel==0.38.4
wrapt==1.12.1
zipp==3.8.1
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