google-deepmind / google-deepmind/alphafold

AttributeError: module 'haiku' has no attribute 'custom_creator'

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Description

Hi,

I am trying to run AF-multimer and my script ran for about 3ish hours and I get the following error. Not sure how to resolve this and would appreciate any advice.

`singularity exec --nv -B /scratch/groups/ $alphafold_singularity \
python $alphafold_run \
--model_preset=multimer \
--data_dir=/scratch/groups/ \
--fasta_paths=/scratch/groups/EGFRvIII.fasta \
--output_dir=/scratch/groups/results \
--use_gpu_relax=True \
--uniref90_database_path=/scratch/groups/uniref90/uniref90.fasta \
--mgnify_database_path=/scratch/groups/mgnify/mgy_clusters_2022_05.fa \
--template_mmcif_dir=/scratch/groups/pdb_mmcif/mmcif_files \
--obsolete_pdbs_path=/scratch/groups/pdb_mmcif/obsolete.dat \
--max_template_date=2022-1-1 \
--db_preset=reduced_dbs \
--small_bfd_database_path=/scratch/groups/small_bfd/bfd-first_non_consensus_sequences.fasta \
--pdb_seqres_database_path=/scratch/groups/pdb_seqres/pdb_seqres.txt \
--uniprot_database_path=/scratch/groups/uniprot/uniprot.fasta`

Thank you in advance.

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