google-deepmind / google-deepmind/alphafold
UnicodeDecodeError: 'charmap' codec can't decode byte 0x8d in position 22: character maps to <undefined>
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Description
Currently working on installing and setting up v2.3.2. Running Windows 11, Docker v24.0.2, and Debian Linux 9.
(NOTE — Not an expert compsci guy, just a tech guy tryna help some science guys.)
When trying to install the `run_docker.py ` dependencies from `requirements.txt`, I am get the following:
```
C:\Users\user_name\Downloads\alphafold-main\alphafold-main>pip3 install -r docker/requirements.txt
Collecting absl-py==1.0.0 (from -r docker/requirements.txt (line 2))
Using cached absl_py-1.0.0-py3-none-any.whl (126 kB)
Collecting docker==5.0.0 (from -r docker/requirements.txt (line 3))
Using cached docker-5.0.0-py2.py3-none-any.whl (146 kB)
Collecting six (from absl-py==1.0.0->-r docker/requirements.txt (line 2))
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting websocket-client>=0.32.0 (from docker==5.0.0->-r docker/requirements.txt (line 3))
Obtaining dependency information for websocket-client>=0.32.0 from https://files.pythonhosted.org/packages/d3/a3/63e9329c8cc9be6153e919e17d0ef5b60d537fed78564872951b95bcc17c/websocket_client-1.6.1-py3-none-any.whl.metadata
Using cached websocket_client-1.6.1-py3-none-any.whl.metadata (7.6 kB)
Collecting requests!=2.18.0,>=2.14.2 (from docker==5.0.0->-r docker/requirements.txt (line 3))
Obtaining dependency information for requests!=2.18.0,>=2.14.2 from https://files.pythonhosted.org/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl.metadata
Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
INFO: pip is looking at multiple versions of docker to determine which version is compatible with other requirements. This could take a while.
ERROR: Could not find a version that satisfies the requirement pywin32==227; sys_platform == "win32" (from docker) (from versions: 303, 304, 305, 306)
ERROR: No matching distribution found for pywin32==227; sys_platform == "win32"
```
Referencing another issue request, [linked here](https://github.com/docker/docker-py/issues/2033), I figured that I needed to install a different version of `pywin32`. I subsequently attempted to install [227](https://pypi.org/project/pywin32/227/), [306](https://pypi.org/project/pywin32/), [304](https://pypi.org/project/pywin32/), and [220](https://pypi.org/project/pypiwin32/220/#files) with the follow always appearing:
```
C:\Users\user_name\Downloads\alphafold-main\alphafold-main>pip3 install -r pywin32-304.0-cp311-cp311-win32.whl
ERROR: Exception:
Traceback (most recent call last):
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\cli\base_command.py", line 180, in exc_logging_wrapper
status = run_func(*args)
^^^^^^^^^^^^^^^
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\cli\req_command.py", line 248, in wrapper
return func(self, options, args)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\commands\install.py", line 342, in run
reqs = self.get_requirements(args, options, finder, session)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\cli\req_command.py", line 436, in get_requirements
for parsed_req in parse_requirements(
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\req\req_file.py", line 148, in parse_requirements
for parsed_line in parser.parse(filename, constraint):
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\req\req_file.py", line 335, in parse
yield from self._parse_and_recurse(filename, constraint)
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\req\req_file.py", line 340, in _parse_and_recurse
for line in self._parse_file(filename, constraint):
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\req\req_file.py", line 371, in _parse_file
_, content = get_file_content(filename, self._session)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\req\req_file.py", line 549, in get_file_content
content = auto_decode(f.read())
^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user_name\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\LocalCache\local-packages\Python311\site-packages\pip\_internal\utils\encoding.py", line 34, in auto_decode
return data.decode(
^^^^^^^^^^^^
File "C:\Program Files\WindowsApps\PythonSoftwareFoundation.Python.3.11_3.11.1264.0_x64__qbz5n2kfra8p0\Lib\encodings\cp1252.py", line 15, in decode
return codecs.charmap_decode(input,errors,decoding_table)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
UnicodeDecodeError: 'charmap' codec can't decode byte 0x8f in position 22: character maps to
```
Any and all help appreciated.
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