google-deepmind / google-deepmind/alphafold

ImageNotFound: 404 Client Error

Open
#806 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
14.9k
Forks
2.9k
PR merge metrics
No merged PRs in 30d

Description

Hello everyone,

I've been trying to set up Alphafold locally over the past week and have been running into a bunch of issues. Right now I got the docker image built, and when I try to run `run_docker.py` I get this error:

`(alpha-env) minsu@minsu-MS-7B79:~/alphafold$ python3 docker/run_docker.py --fasta_paths=/home/minsu/Sequences/htt.fasta --max_template_date=2022-01-01 --data_dir=/home/minsu/DATABASES --output_dir=/home/minsu/output
I0801 00:34:25.236747 140390681702400 run_docker.py:116] Mounting /home/minsu/Sequences -> /mnt/fasta_path_0
I0801 00:34:25.236881 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/uniref90 -> /mnt/uniref90_database_path
I0801 00:34:25.236961 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/mgnify -> /mnt/mgnify_database_path
I0801 00:34:25.237031 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES -> /mnt/data_dir
I0801 00:34:25.237092 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/pdb_mmcif/mmcif_files -> /mnt/template_mmcif_dir
I0801 00:34:25.237161 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/pdb_mmcif -> /mnt/obsolete_pdbs_path
I0801 00:34:25.237237 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/pdb70 -> /mnt/pdb70_database_path
I0801 00:34:25.237309 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/uniref30 -> /mnt/uniref30_database_path
I0801 00:34:25.237380 140390681702400 run_docker.py:116] Mounting /home/minsu/DATABASES/bfd -> /mnt/bfd_database_path
Traceback (most recent call last):
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/client.py", line 268, in _raise_for_status
response.raise_for_status()
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/requests/models.py", line 1021, in raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 404 Client Error: Not Found for url: http+docker://localhost/v1.43/containers/create

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/models/containers.py", line 811, in run
container = self.create(image=image, command=command,
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/models/containers.py", line 870, in create
resp = self.client.api.create_container(**create_kwargs)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/container.py", line 430, in create_container
return self.create_container_from_config(config, name)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/container.py", line 441, in create_container_from_config
return self._result(res, True)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/client.py", line 274, in _result
self._raise_for_status(response)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/client.py", line 270, in _raise_for_status
raise create_api_error_from_http_exception(e)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/errors.py", line 31, in create_api_error_from_http_exception
raise cls(e, response=response, explanation=explanation)
docker.errors.ImageNotFound: 404 Client Error for http+docker://localhost/v1.43/containers/create: Not Found ("No such image: alphafold:latest")

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/client.py", line 268, in _raise_for_status
response.raise_for_status()
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/requests/models.py", line 1021, in raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 404 Client Error: Not Found for url: http+docker://localhost/v1.43/images/create?tag=latest&fromImage=alphafold

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/minsu/alphafold/docker/run_docker.py", line 267, in
app.run(main)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/absl/app.py", line 312, in run
_run_main(main, args)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/absl/app.py", line 258, in _run_main
sys.exit(main(argv))
File "/home/minsu/alphafold/docker/run_docker.py", line 237, in main
container = client.containers.run(
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/models/containers.py", line 814, in run
self.client.images.pull(image, platform=platform)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/models/images.py", line 446, in pull
pull_log = self.client.api.pull(
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/image.py", line 430, in pull
self._raise_for_status(response)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/api/client.py", line 270, in _raise_for_status
raise create_api_error_from_http_exception(e)
File "/home/minsu/alphafold/alpha-env/lib/python3.10/site-packages/docker/errors.py", line 31, in create_api_error_from_http_exception
raise cls(e, response=response, explanation=explanation)
docker.errors.ImageNotFound: 404 Client Error for http+docker://localhost/v1.43/images/create?tag=latest&fromImage=alphafold: Not Found ("pull access denied for alphafold, repository does not exist or may require 'docker login': denied: requested access to the resource is denied")`

When I run `docker images` , it shows that alphafold is there, so I'm not entirely sure how to fix it from here.
REPOSITORY TAG IMAGE ID CREATED SIZE
alphafold latest 7b33eab18f4b About an hour ago 10.3GB
hello-world latest 9c7a54a9a43c 2 months ago 13.3kB

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.