google-deepmind / google-deepmind/alphafold

clarification of pTM/ipTM scores in AF multimer

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Description

Hello, reading the AF multimer manuscript I see ipTM reflects on all inter-chain confidence. However, it is not clear to me if pTM is computed on all residues, or only on same-chain residues, as this is not really made clear in the manuscript. In the monomer model the two things are one and the same, but I wonder if in multimer pTM is onlz based on intra-chain confidence or it is all-residue?

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