google-deepmind / google-deepmind/alphafold
python run_docker.py --helpshort|grep 'num_multimer_predictions_per_model' --num_multimer_predictions_per_model: How many predictions (each with a
- Dominant language
- Python
- Stars
- 14.9k
- Forks
- 2.9k
- PR merge metrics
- No merged PRs in 30d
Description
tail -f /data01/alphafold/run_logs/rcsb_pdb_1H15.fasta.full_dbs.log
I0426 11:34:48.328172 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/mgnify -> /mnt/mgnify_database_path
I0426 11:34:48.328236 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database -> /mnt/data_dir
I0426 11:34:48.328297 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_mmcif/mmcif_files -> /mnt/template_mmcif_dir
I0426 11:34:48.328365 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_mmcif -> /mnt/obsolete_pdbs_path
I0426 11:34:48.328434 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/uniprot -> /mnt/uniprot_database_path
I0426 11:34:48.328509 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_seqres -> /mnt/pdb_seqres_database_path
I0426 11:34:48.328591 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path
I0426 11:34:48.328667 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/bfd -> /mnt/bfd_database_path
I0426 11:34:51.759719 139772739196992 run_docker.py:255] _**FATAL Flags parsing error: Unknown command line flag 'num_multimer_predictions_per_model'**_
I0426 11:34:51.760205 139772739196992 run_docker.py:255] Pass --helpshort or --helpfull to see help on flags.
^C
[1]+ Done nohup python /data01/alphafold/alphafold-main/docker/run_docker.py --fasta_paths=/data01/alphafold/fasta/rcsb_pdb_1H15.fasta --max_template_date=2022-04-19 --model_preset=multimer --num_multimer_predictions_per_model=1 --db_preset=full_dbs --data_dir=/data01/alphafold/database --output_dir=/data01/alphafold/result > /data01/alphafold/run_logs/rcsb_pdb_1H15.fasta.full_dbs.log
其实是有这个参数:
python run_docker.py --helpshort|grep 'num_multimer_predictions_per_model'
--num_multimer_predictions_per_model: How many predictions (each with a
Contributor guide
Assessment
This issue has not been assessed yet.