weird error message when opening a repo for the first time after cloning

### Tested versions

- Reproducible in: 4.2.2.stable,4.3.rc3

### System information

Android 11-Redmi 10 2022-Godot v4.2.2.stable

### Issue description

When i clone my preexisting repo from github and open it for the first time with godot
Editor it there is a error in the output it says
> Cannot convert to <-> from compressed formats. Use compress() and decompress() instead.

It doesn't cause any issue tho. Everything works normally AFAIK.
It doesn't pop up ever again just for the first time.

### Steps to reproduce

Clone a repo from github
Open with Godot editor

### Minimal reproduction project (MRP)

~~https://github.com/shahriarlabib000/dice~~

- Instructions: don't unzip the project externally.directly open with godot

[dice.zip](https://github.com/user-attachments/files/16551836/dice.zip)

Start by reproducing the first-open workflow with the attached dice.zip in the Godot editor and observe the output containing the compressed-formats conversion error. Trace the startup path that emits it; done means cloning and opening the project no longer produces this harmless first-time error while normal project behavior remains unchanged.

Written by the indexing model from the issue text.