Connot run own compiled godot-mono

### Tested versions

3.5stable

### System information

Debian12-arm64, godot3.5-stable-mono, virgl

### Issue description

After I ran the compiled binary, the window disappeared in less than a second, followed by an error:
`
Mono: Log file is: '/home/lerio/.local/share/godot/mono/mono_logs/2024-02-01_03.25.47_15817.log'
ERROR: Failed to load one of the prebuilt API assemblies.
at: _load_api_assemblies (modules/mono/mono_gd/gd_mono.cpp:932)
`
I looked at the log, and the log said it was missing a file, I found it in my mono/lib directory and copied it to try it. Run it again, it's still this error, but the log shows a new result, saying that there is a problem with my mono version (the specific log is attached), and the version number of the mono I compiled myself is 6.12.0.199 (tarball... (compilation time)...)

### Steps to reproduce

pyston-scons platform=x11 tools=yes module_mono_enabled=yes mono_glue=no mono_prefix=/opt/mono_6.12/ -j8
...
./bin/godot.x11.tools.64.mono --generate-mono-glue modules/mono/glue
...
pyston-scons platform=x11 tools=yes target=release_debug module_mono_enabled=yes mono_glue=yes mono_prefix=/opt/mono_6.12/ -j8
``

### Minimal reproduction project (MRP)

here is the log
[2024-02-01_03.25.47_15817.log](https://github.com/godotengine/godot/files/14120163/2024-02-01_03.25.47_15817.log)
[2024-02-01_03.42.38_20195.log](https://github.com/godotengine/godot/files/14120170/2024-02-01_03.42.38_20195.log)

Start with modules/mono/mono_gd/gd_mono.cpp at _load_api_assemblies (line 932) and inspect the attached logs alongside the exact pyston-scons commands. Reproduce on Debian 12 arm64 with the stated Mono 6.12.0.199 setup; done means the compiled mono binary starts without the prebuilt API assembly or version errors.

Written by the indexing model from the issue text.