glotzerlab / glotzerlab/hoomd-examples

Tutorial: Bead spring polymers

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enhancement
Dominant language
Jupyter Notebook
Stars
40
Forks
14
Avg merge
16h 29m
Merged PRs (30d)
3

Description

Tutorial description

Teach users how to run simulations of bead spring polymers.

  • Initialization (bonds, angles).
  • Compression.
  • Exclusions.
  • Pair and bond forces.

Author

Contributions welcome. I plan to write this when time permits.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Use the proposed scope as the starting checklist: initialization with bonds and angles, compression, exclusions, and pair and bond forces. The finished work should be a tutorial teaching users to run bead spring polymer simulations; no target files or tests are identified in the issue.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
documentation
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
38/100

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