gbouras13 / gbouras13/plassembler
.gfa output file not a typical gfa format
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 90
- Forks
- 12
- Avg merge
- 6d 4h
- Merged PRs (30d)
- 2
Description
The _plasmid.gfa files doesn't contain typical gfa-data. Therefore I'm not able to open it with Bandage.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating where the _plasmid.gfa files are generated and inspect one output alongside the GFA format expected by Bandage. Reproduce the reported inability to open it, then determine the specific format issue and confirm that the generated output opens correctly in Bandage.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100