gbouras13 / gbouras13/plassembler
Coverage stats in output
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- Dominant language
- Python
- Stars
- 90
- Forks
- 12
- Avg merge
- 6d 4h
- Merged PRs (30d)
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Description
Hi @gbouras13 ,
I use hybracter to assemble bacterial genomes and plasmids from long read sequencing. I want to assemble single plasmids from long read sequencing but hybracter does not work with only my small plasmids. So I used plassembler to do it.
When I use hybracter, I have an output file with coverage statistics per contig that I don't have when I use plassembler alone.
Do you think you will add this in future updates of plassembler ?
I think this is important information :)
Best regards
Corentin
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are identified in the issue. Start by locating plassembler's output-generation path and determine what per-contig coverage statistics should be represented; done means the output includes coverage statistics for assembled plasmids.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100