galaxyproject / galaxyproject/usegalaxy-tools

Circos: configuration problem at ORG

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bug site/org
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1d 3h
Merged PRs (30d)
25

Description

test history https://usegalaxy.org/u/jen-galaxyproject/h/circos-nature-workflow
tool_id=toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy12
test case https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/tutorial.html#example-nature-cover-encode
error `Conda dependency seemingly installed but failed to build job environment.`

![Screen Shot 2024-03-07 at 4 40 38 PM](https://github.com/galaxyproject/usegalaxy-tools/assets/8999735/194681c9-8ec3-4121-9e18-97d296fd2e14)

Contributor guide

No contributing guide indexed for this repository

Research direction

Start with the linked test history and the Circos tool ID for version 0.69.8+galaxy12, then compare the failing job environment with the training tutorial's example. Reproduce the `Conda dependency seemingly installed but failed to build job environment` error and verify that the test case completes successfully once the configuration problem is addressed.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics, tooling
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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