galaxyproject / galaxyproject/usegalaxy-tools

Configuration problem with metabat2 2.15+galaxy3

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Description

tool_id=toolshed.g2.bx.psu.edu/repos/iuc/metabat2/metabat2/2.15+galaxy3

Newer tool with what seems like a configuration problem. (added for Metagenomics pub?)

Output datasets are red with a metadata warning. If imported to another account, turn green but are still empty.

Test data history. First run was at EU, second at ORG
https://usegalaxy.org/u/jen-galaxyproject/h/imported-from-archive-test-metabat2

No job logs written, just the command string.

Xref to ticket for a missing paired tool https://github.com/galaxyproject/usegalaxy-tools/issues/691

Contributor guide

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Research direction

Start with the reported tool_id for metabat2 2.15+galaxy3 and inspect the linked test data history and command string, since no job logs were written. Compare the EU and ORG runs and the imported history; done means the output datasets are populated and no longer show the metadata warning.

Written by the indexing model from the issue text.

Assessment

Domain
tooling
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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