galaxyproject / galaxyproject/training-material
Metagenome assembly tutorial "broken"?
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- HTML
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Description
The [QC step](https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/metagenomics-assembly/tutorial.html#comment-4) of the tutorial suggests to upload the html results of QUAST.
This does not work: https://github.com/galaxyproject/galaxy/issues/19220 also the results are not available as data library (or I have not found it).
In my tests the QUAST step took 5 hours and failed for some of the datasets, since it downloads reference genomes from NCBI which seems to fail from time to time (as in this super old [issue](https://github.com/ablab/quast/issues/8)).
- Restarting quast seems possible, but problematic for the [multi-output tool](https://github.com/galaxyproject/galaxy/issues/18531), i.e. one one gets one updated output. Maybe this might work out if combined with MultiQC
- Maybe replace QUAST by CheckM?
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