galaxyproject / galaxyproject/training-material

Fixup: minor error with pyGenomeTracks option in workflow for atac-seq

Open
#4,943 1 comment 0 reactions 0 assignees View on GitHub
improvement
Dominant language
HTML
Stars
367
Forks
1.1k
Avg merge
16h 27m
Merged PRs (30d)
49

Description

https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html

This is the single bad option. If fixed-up, tutorial's entire wf runs great at ORG :)

![ATAC-seq GTM_tutorial-wf-fixup](https://github.com/galaxyproject/training-material/assets/8999735/bce2c2c3-d255-40ca-b68e-034a978a43e3)

ping @lldelisle @mblue9 @heylf

Contributor guide

Open the contributing guide

Research direction

Open the linked ATAC-seq tutorial and inspect its workflow for the pyGenomeTracks option shown in the issue image. Identify the single invalid option, correct it, and confirm that the tutorial workflow runs successfully.

Written by the indexing model from the issue text.

Assessment

Domain
documentation
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.