galaxyproject / galaxyproject/training-material

Using dataset collections - Outdated tool info

Open
#3,859 2 comments 0 reactions 0 assignees View on GitHub
bug galaxy-interface galaxy-release-testing help-wanted
Dominant language
HTML
Stars
367
Forks
1.1k
Avg merge
16h 27m
Merged PRs (30d)
49

Description

Release testing 23.0
Tutorial: https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/collections/tutorial.html

* Mapping reads
- usegalaxy.org's version has 1 more option than the version shown ("BAM sorting mode"). Resulting collection looks the same
* Create table of variants using SnpSift Extract Fields
- Tool has two additional required fields. No value shown in the tutorial for these fields. Inserting a space into both seemed to work, but I do not know if the results are the same

Contributor guide

Open the contributing guide

Research direction

Open the linked collections tutorial and compare its Mapping reads and SnpSift Extract Fields steps with the current tool interfaces. Confirm the documented options, required fields, and resulting collections before editing. Done means the tutorial includes the BAM sorting mode and the two required SnpSift fields with verified values or guidance.

Written by the indexing model from the issue text.

Assessment

Tech stack
html
Domain
documentation
Issue type
Documentation
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.