galaxyproject / galaxyproject/training-material
Using dataset collections - Outdated tool info
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- HTML
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Description
Release testing 23.0
Tutorial: https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/collections/tutorial.html
* Mapping reads
- usegalaxy.org's version has 1 more option than the version shown ("BAM sorting mode"). Resulting collection looks the same
* Create table of variants using SnpSift Extract Fields
- Tool has two additional required fields. No value shown in the tutorial for these fields. Inserting a space into both seemed to work, but I do not know if the results are the same
Contributor guide
Research direction
Open the linked collections tutorial and compare its Mapping reads and SnpSift Extract Fields steps with the current tool interfaces. Confirm the documented options, required fields, and resulting collections before editing. Done means the tutorial includes the BAM sorting mode and the two required SnpSift fields with verified values or guidance.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- html
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100