galaxyproject / galaxyproject/training-material

Peptide and Protein ID doesnt work

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proteomics
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Description

https://github.com/galaxyproject/training-material/blob/master/topics/proteomics/tutorials/protein-id-sg-ps/tutorial.md

I think this tutorial needs to be updated. The files cannot be converted..can we use msconvert vendor support directly to convert raw to mgf?? then use SGPS?

Contributor guide

Open the contributing guide

Research direction

Start with topics/proteomics/tutorials/protein-id-sg-ps/tutorial.md and reproduce the reported file-conversion failure. Investigate whether msconvert vendor support can convert raw files to MGF for use with SGPS. Done means the tutorial documents a working conversion and protein-identification path.

Written by the indexing model from the issue text.

Assessment

Domain
documentation
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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