galaxyproject / galaxyproject/tpv-shared-database
Update minimum RAM for Flye
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Description
Hi!
To run, **Flye** needs to first get all the reads in the memory, therefore, the minimum RAM requirement equals the (uncompressed) reads file size. Would it be possible to modify the RAM to something like 1.2 times the reads file size?
Now it is:
```
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/.*:
cores: 20
mem: 60
```
:)
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Research direction
Start by locating the Flye rule matching toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/.* and checking how its cores and mem values are defined. Determine whether the shared rules can derive memory from the uncompressed reads file size, then verify that the configured minimum is 1.2 times that size.
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Assessment
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100