galaxyproject / galaxyproject/tools-iuc
Bug or dependency issue with Hyphy-meme optional input
- Dominant language
- HTML
- Stars
- 201
- Forks
- 525
- Avg merge
- 23h 54m
- Merged PRs (30d)
- 59
Description
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_meme/hyphy_meme/2.5.47+galaxy0
The optional nhx/newick input appears to be required?
> Master node received an error:Illegal right hand side in call to Topology id = ...; it must be a string, a Newick tree spec or a topology
Test histories
https://usegalaxy.org/u/jen-galaxyproject/h/imported-from-archive-test-hyphy-meme
https://usegalaxy.eu/u/jenj/h/test-hyphy-meme
Contributor guide
Research direction
Start with the HyPhy-MEME tool version at toolshed.g2.bx.psu.edu/repos/iuc/hyphy_meme/hyphy_meme/2.5.47+galaxy0 and reproduce the failure using the linked Galaxy test histories. Determine why the optional nhx/newick input produces the topology error when omitted, then confirm the tool runs successfully without that input.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100