issues with trinity de novo assembly (errors 316, 237??)

Hi everyone,
I am trying to do use the Trinity de novo assembly tool on my dataset on the Galaxy platform (toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1.)

The error report in general says "The tool was executed with one or more duplicate input datasets. This frequently results in tool errors due to problematic input choices." However, I know that my input datasets are not duplicate, but are "left" and "right" sides of gene coding regions.

I have used Trinity countless times without this error, so am confused now. Help!
_Tessa

Start with the Galaxy Trinity 2.9.1 tool linked in the issue and reproduce the error using paired left and right inputs that are not duplicates. Compare the tool's duplicate-input validation with the reported error; done means determining whether the wrapper incorrectly rejects valid pairs and documenting or correcting that behavior.

Written by the indexing model from the issue text.