galaxyproject / galaxyproject/tools-devteam
Annovar produces green empty dataset when output set to VCF
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bug
- Dominant language
- Python
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- 37
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Description
Details reported in dataset info field:
> Log: tool progress
> Log: tool progress
> Unknown option: vcfinput
> Usage:
> table_annovar.pl [arguments]
>
> ```
> Optional arguments:
> -h, --help print help message
> -m, --man
> ```
Executing the same exact job with tabular output is successful.
Modification was added here: https://github.com/galaxyproject/tools-devteam/pull/109
Where using "vcfinput" versus "vcfoutput" was discussed.
Reported by: https://biostar.usegalaxy.org/p/15686/
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