galaxyproject / galaxyproject/tools-devteam

Kraken installation via tool shed on Mac OSX 10.10.5 (for development)

Open
#315 3 comments 0 reactions 0 assignees View on GitHub
bug
Dominant language
Python
Stars
37
Forks
94
PR merge metrics
No merged PRs in 30d

Description

I get the following error installing the 'kraken' part of the devteam kraken tool from the tool shed:

```
In file included from krakendb.cpp:20:
./kraken_headers.hpp:36:10: fatal error: 'omp.h' file not found
#include
^
1 error generated.
make: *** [krakendb.o] Error 1
/bin/sh: /bin/true: No such file or directory
```

tool: devteam kraken 0.10.5

Contributor guide

Open the contributing guide

Research direction

Start with the devteam kraken 0.10.5 build around krakendb.cpp and kraken_headers.hpp, then inspect the installation output for the missing omp.h and /bin/true errors on Mac OS X 10.10.5. Determine whether the tool can complete installation in that environment; done means the Kraken tool installs without these build failures.

Written by the indexing model from the issue text.

Assessment

Tech stack
cpp, macos
Domain
build-system
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
25/100

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