galaxyproject / galaxyproject/tools-devteam

Bwa-mem issues

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bug
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Python
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Description

- [x] stderr regex is less than ideal—a missing index gives a "fail" message but the job succeeds
- [ ] the output dataset build is not set when there is an entry in the loc file in the data manager directory but not in the loc file in the tool directory—this may be a framework issue.

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