galaxyproject / galaxyproject/tools-devteam
Genome fetching data manager has incorrect "GATK" sort
Open
- Dominant language
- Python
- Stars
- 37
- Forks
- 94
- PR merge metrics
- No merged PRs in 30d
Description
Tools:
https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_all_fasta/fb744a070bee
https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_dbkeys_all_fasta/bca4c608408c
Problem: chrM is not ordered for GATK
Also see:
https://biostar.usegalaxy.org/p/13903/#14444
Contributor guide
Assessment
This issue has not been assessed yet.