galaxyproject / galaxyproject/tools-devteam
Unsorted BAM input not parsed by sam_merge ("Merge BAM Files" in UI)
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- Dominant language
- Python
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Description
Submitting BWA output directly to this tool, without using SortSAM first, produces an error. There is no warning on the tool for that SortSam is required before use. And there is an option to specify that the inputs are unsorted. One of these should be probably be modified to help users understand how to use the tool.
See other issue for sam_merge for the type of output produced by the error and the tool version (issue #158)
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