galaxyproject / galaxyproject/planemo

output_collection file comparison is seemingly ignored

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#890 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
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110
Forks
102
Avg merge
4d 21h
Merged PRs (30d)
13

Description

I have a tool with a test like:

```

...





```

irrespective of the content of the the bam files the test is successful. Same if compare="diff".

The `` are not completely ignored: if I give a wrong file name the test fails.

Contributor guide

Open the contributing guide

Research direction

Locate the handling for Galaxy tool-test output_collection elements and reproduce the XML example with differing BAM contents. Check why compare="sim_size" and compare="diff" do not affect the result while an incorrect file name does; done means content comparisons fail when expected and pass for matching outputs.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
testing
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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