galaxyproject / galaxyproject/planemo
Cannot install from Tool Shed in Virtual Appliance
- Dominant language
- Python
- Stars
- 110
- Forks
- 102
- Avg merge
- 4d 21h
- Merged PRs (30d)
- 13
Description
I failed to install fastqc from main tool shed in VM's Galaxy (planemo-machine-1498170684).
I found below error message in /home/ubuntu/galaxy_web0.log
> tool_shed.util.hg_util DEBUG 2017-10-22 02:13:14,197 Error cloning repository: [Errno 13] Permission denied: '/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu'
Owner of /opt/galaxy/shed_tools/ dir is root/root.
I changed owner of it to ubuntu/ubuntu.
It seems to success to install.
Is it right way?
Thanks!
Contributor guide
Research direction
Start by reviewing /home/ubuntu/galaxy_web0.log and the permissions on /opt/galaxy/shed_tools in the planemo-machine virtual appliance, then reproduce the fastqc installation from the main Tool Shed. Done means the installation works with the appliance's intended ownership and permissions, without requiring a manual ownership change.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- infrastructure
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100