galaxyproject / galaxyproject/planemo

Planemo `bioc_tool_init` command do not recognize `--example_command`

Open
#718 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
110
Forks
102
Avg merge
4d 21h
Merged PRs (30d)
13

Description

I am facing a problem while converting a RScript into a Galaxy tool using Planemo.

- If I use `planemo bioc_tool_init` `--rscript` `--input` `--output` `--command`: **Tool build**
- If I use `planemo bioc_tool_init` `--rscript` `--input` `--output` `--command` `--test_case`: **Can only use the --test_case option if also specifying --example_command**
- If I use `planemo bioc_tool_init` `--rscript` `--input` `--output` `--example_command` `--test_case`: **Error: no such option: `--example_command`**

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.