galaxyproject / galaxyproject/planemo

planemo shed_update failing, Connection aborted, BadStatusLine

Open
#575 13 comments 1 reaction 0 assignees View on GitHub
bug high priority toolshed
Dominant language
Python
Stars
110
Forks
102
Avg merge
4d 21h
Merged PRs (30d)
13

Description

I've not updated anything on the (Test) ToolShed for a while, so I don't know when this changed but:

```
$ uname
Darwin
$ planemo --version
planemo, version 0.33.0.dev0
$ planemo shed_update -t testtoolshed ~/repositories/galaxy_blast/tools/blast2go/ -m "v0.0.11 Fix parameter help text which was not being displayed"
cd '/Volumes/Hitachi-3TB-mirrored/repositories/galaxy_blast/tools/blast2go' && git rev-parse HEAD
cd '/Volumes/Hitachi-3TB-mirrored/repositories/galaxy_blast/tools/blast2go' && git diff --quiet
Could not update blast2go
('Connection aborted.', BadStatusLine("''",))
Repository metadata updated successfully for repository blast2go.
Failed to update a repository.
```

The blank status line is odd...

Contributor guide

Open the contributing guide

Research direction

Start at the planemo shed_update command and reproduce the reported Test ToolShed failure using the command shown. Trace the request that produces the blank BadStatusLine response, then verify the repository update completes successfully without the connection-aborted error.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, networking
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
25/100

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