galaxyproject / galaxyproject/planemo
Implement functionality to create tools from BioBoxes
- Dominant language
- Python
- Stars
- 110
- Forks
- 102
- Avg merge
- 4d 21h
- Merged PRs (30d)
- 13
Description
There is a great start from @jjkoehorst here https://github.com/jjkoehorst/GalaxyBiobox. Integrating it into planemo might mean we can generate both Galaxy tools and CWL tools from the same codebase and at very least would increase the visibility of this feature.
I am imagining this could be an extension to the `tool_init` concept the way Bioconductor tools are being integrated #492 #493.
Contributor guide
Research direction
Start by reviewing the GalaxyBiobox project and Planemo's `tool_init` concept, then compare the Bioconductor integration work in issues #492 and #493. Determine the integration boundary needed to generate Galaxy and CWL tools from the same codebase. Done means the proposed BioBoxes functionality is integrated into Planemo with a clear, tested creation workflow.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100