galaxyproject / galaxyproject/planemo

`planemo shed_update` updates suites before contained tools

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#1,194 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
110
Forks
102
Avg merge
4d 21h
Merged PRs (30d)
13

Description

Noticed when adding a tool to `suite_samtools` in https://github.com/galaxyproject/tools-iuc/pull/3740 .

Contributor guide

Open the contributing guide

Research direction

Start by locating the `planemo shed_update` command and reproduce the ordering with the `suite_samtools` case described in the issue. Trace how suites and their contained tools are selected for updates; done means contained tools update before the suites that include them, with coverage for the ordering.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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