galaxyproject / galaxyproject/iwc

Workflow to concatenate fastqs from different lanes

Open
#311 3 comments 0 reactions 0 assignees View on GitHub
Dominant language
Vue
Stars
57
Forks
97
Avg merge
5d 7h
Merged PRs (30d)
17

Description

It would be good to have a workflow which takes as input a collection with fastqs from different lanes and concatenate if needed samples from the same samples.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start from the issue description and review existing Galaxy workflow conventions for collection inputs containing FASTQs from multiple lanes. Clarify how samples are identified and when concatenation is needed; done means a workflow accepts the collection and correctly combines FASTQs belonging to the same sample.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.