galaxyproject / galaxyproject/iwc

IWC goals 21.09

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Description

We've had a meeting today and we focused on these things we would like to accomplish:

- Get the IWC started
- [x] Writing how to contribute (@mvdbeek) https://github.com/galaxyproject/iwc/pull/41
- [x] Best practices: (@mvdbeek) (Based on / linked to planemo documentation) https://github.com/galaxyproject/iwc/pull/41
- [x] Don’t include internal galaxy version
- [x] Require release tag (or something)
- [ ] Deposit workflows
- [ ] OpenMS (@bernt-matthias )
- [ ] RNAseq (@mvdbeek )
- [x] Update Covid Workflows (@wm75 )
- [x] Add some computational chemistry workflows (@simonbray ) https://github.com/galaxyproject/iwc/pull/68
- [ ] Deploy workflows to usegalaxy.* (and interested community servers) (@mvdbeek)
- [ ] And/or let deployers specify list of workflows to monitor
- [ ] Maybe integration with usegalaxy-tools (???) (Stretchgoal)
- [ ] Community outreach, find contributors (everyone)

- Enhance Galaxy for IWC
- [ ] Link inside the app to update workflow (@jmchilton )
- [ ] Update mechanism for TRS workflows (@jmchilton )
- [ ] Display CHANGELOG/History
- [x] Improve / fix TRS search
- [x] https://github.com/galaxyproject/galaxy/issues/12176
- [ ] “Request tools for this workflow” (Stretch goal)
- [ ] Additional Markdown description field (@mvdbeek )
- [ ] Prettier diffs (maybe in planemo)
- [x] Convert .ga files to format2 format (https://github.com/galaxyproject/gxformat2/pull/64)
- [ ] [Switch Export Default to YAML](https://github.com/galaxyproject/galaxy/issues/13584) (@jmchilton )
- [ ] More testing? (@wm75 )
- [ ] More manual inspection

- Continue improving command line execution with planemo:
- [x] Rerun with planemo run (@simonbray ) https://github.com/galaxyproject/planemo/pull/1140
- [x] Workflow execution reports (@simonbray ) https://github.com/galaxyproject/planemo/pull/1153

- Static Display of Workflows in Repo (Stretch Goal - @jmchilton )
- [ ] Linking test data, pages for describing how to run.

We've decided on monthly meetings, every 3rd Monday of the Month. A calendar is [here](https://calendar.google.com/calendar/embed?src=tfgd6pg2nujphhp7gqh4n1blc8%40group.calendar.google.com&ctz=Europe%2FAmsterdam)

Contributor guide

No contributing guide indexed for this repository

Research direction

This is a broad meeting roadmap rather than a single implementation task, and it names no files, tests, or entry points. Review the unchecked goals and the referenced Galaxy, Planemo, and gxformat2 issues or pull requests first; one item must be scoped with a clear completion condition before work can be considered done.

Written by the indexing model from the issue text.

Assessment

Domain
devops, tooling
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
10/100

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