galaxyproject / galaxyproject/iwc
"Try with example data" from iwc failures due to metadata issues
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- Vue
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- 57
- Forks
- 97
- Avg merge
- 5d 7h
- Merged PRs (30d)
- 17
Description
There are issues with the upload of data when using the "try with example data" form iwc.
## Issue 1
Workflow: https://iwc.galaxyproject.org/workflow/scaffolding-hic-vgp8-main/
Trying to run with example data on main. When starting the invocation, scheduling fails with the error
```
Invocation scheduling failed because an unexpected failure occurred at step 5: 'Extension 'auto' unknown, cannot use dataset collection as input'
```
Collection has format "auto"
Example invocation: https://usegalaxy.org/workflows/invocations/0d15b56dc0b2ad15
## Issue 2
Workflow: https://iwc.galaxyproject.org/workflow/assembly-hifi-hic-phasing-vgp4-main/
Error
```
Invocation scheduling failed because step 35 requires a dataset created by step 8779042, but dataset entered a failed state.
```
The first tool running on one of the tabular input fails wih the error :
```
Missing column types. In Galaxy, click the pencil icon on the history item and select the Auto-detect option to correct it. This tool can only be used with tab-delimited data
```
The input looks correct
Invocation: https://usegalaxy.org/workflows/invocations/ed11e3ad1560556e?success=true
Contributor guide
No contributing guide indexed for this repository
Research direction
Start with the two workflow links and the example invocations in the issue, reproducing each failure on usegalaxy.org. Inspect the example-data upload and invocation-scheduling path for the reported collection format and missing column types. Done means both workflows can be started successfully with example data without metadata-related scheduling or tool failures.
Written by the indexing model from the issue text.
Assessment
- Domain
- backend, data-engineering
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100