galaxyproject / galaxyproject/idc
Update Kraken2 + Braken indexes for July 2025 and October 2025 updates
Open
- Dominant language
- Shell
- Stars
- 10
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Source
https://benlangmead.github.io/aws-indexes/k2
PRs
https://github.com/galaxyproject/tools-iuc/pull/6980
https://github.com/galaxyproject/tools-iuc/pull/7644
Forum
https://help.galaxyproject.org/t/kraken2-build-databases-download-fails-with-not-found-path/17400/3
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by reviewing the linked PRs 6980 and 7644 in tools-iuc, then compare the current index definitions with the AWS index source. Check the forum thread for the reported download failure. Done means the Kraken2 and Bracken index entries reflect the July 2025 and October 2025 updates and their downloads resolve correctly.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- bioinformatics, databases
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100