galaxyproject / galaxyproject/idc
Request: Update Dada2 indexes, including Silva
- Dominant language
- Shell
- Stars
- 10
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.34.0+galaxy1
SILVA SSU and LSU databases 138.2 as of July 11, 2024
**Xref**
* https://www.arb-silva.de/documentation/ -- original releases
* https://benjjneb.github.io/dada2/training.html -- DADA2-formatted reference databases
All users can use this same data immediately by loading up the reference and selecting it from the history on the tool form. Please see this Galaxy Help topic for the details -> https://help.galaxyproject.org/t/dada2-assigntaxonomy-and-addspecies/17346
Contributor guide
No contributing guide indexed for this repository
Research direction
Start with the DADA2 tool entry point at toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/.../1.34.0+galaxy1 and review the linked DADA2 training and SILVA documentation. Done means the SILVA SSU and LSU 138.2 reference data are updated and available for selection in the Galaxy tool form.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, databases
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100