galaxyproject / galaxyproject/idc
Add Sylph, DeepARG and Groot DB
- Dominant language
- Shell
- Stars
- 10
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Hi,
I'm using the Groot, Sylph and DeepARG wrappers with a workflow that I want to add on IWC repo.
Is it possible to add the next databases to http://datacache.galaxyproject.org/ to run the test for a PR ?
- `sylph_downloaded_21072025_gtdb-r220-c200-dbv1.syldb`
- `sylph_tax_downloaded_21072025`
- `deeparg_1.0.4-03072025`
- `arg-annot.90-1.1.2-09122024`
They are already on galaxy EU
Thanks,
Hugo
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by inspecting the idc repository for how reference databases are registered for datacache.galaxyproject.org, then compare existing entries with the four named Sylph and DeepARG databases. Done means the requested databases are available in the cache and can support the IWC pull-request test; no files or tests are named in the issue.
Written by the indexing model from the issue text.
Assessment
- Domain
- database
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100