galaxyproject / galaxyproject/idc
Add tardigrade genomes to the CVMFS resource
- Dominant language
- Shell
- Stars
- 10
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- 8
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Description
Per [this Galaxy Help ticket](https://help.galaxyproject.org/t/adding-the-tardigrade-h-exemplaris-genome-to-galaxy/12160/2), please add two tardigrade genomes (_H. exemplaris_ and _R. varieornatus_) to the CVMFS resource.
Please see below for the information that you'll need. It wasn't entirely clear to me what the dbkey and id fields should be, so I used the Assembly name for both.
**_H. exemplaris_**:
dbkey: nHd_3.1
description: "Hypsibius exemplaris Z151"
id: nHd_3.1
fasta URL: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002082055.1/
reference annotation link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002082055.1/
**_R. varieornatus_**:
dbkey: Rvar_4.0
description: "Ramazzottius varieornatus YOKOZUNA-1"
id: Rvar_4.0
fasta URL: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001949185.1/
reference annotation link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001949185.1/
Contributor guide
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Research direction
Locate the CVMFS resource configuration and compare how existing genome entries are represented. Add entries for H. exemplaris and R. varieornatus using the supplied dbkeys, descriptions, IDs, FASTA URLs, and annotation links; done means both genomes are included in the resource with their requested metadata.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- data, infrastructure
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100