galaxyproject / galaxyproject/galaxy_codex

microGalaxy lab workflow URLs

Open
#306 0 comments 0 reactions 2 assignees Claimed by @EngyNasr View on GitHub
Dominant language
HTML
Stars
28
Forks
36
Avg merge
19h 29m
Merged PRs (30d)
1

Description

A few issues with workflows in [5_workflows.yml](https://github.com/galaxyproject/galaxy_codex/blob/main/communities/microgalaxy/lab/sections/5_workflows.yml):

- Some links like https://workflowhub.eu/workflows/1189?version=2 which is OK (maybe omit the `version` param to default to latest?)
- Then some like https://dev.workflowhub.eu/workflows/... - is dev subdomain a mistake?
- Then some like https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8 - is it possible to have these linked to workflowhub instead or are these only available on EU?

For WFHub links, we decided that URLs like this make for the best user experience:
`{{ galaxy_base_url }}/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=1189`

This opens the TRS import function in the current Galaxy server, so the user can import the workflow immediately. We also include a `view_link` button so they can also view on workflowhub if they wish:

https://github.com/galaxyproject/galaxy_codex/blob/3b696ea9cf5971440681b7429fe83f651ffe1086/communities/genome/lab/annotation.yml#L174-L186

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.