galaxyproject / galaxyproject/galaxy

vcf.gz files can be loaded, but can't then be used as the input to another step; vcf files are fine

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#7,364 9 comments 1 reaction 1 assignee Claimed by @almahmoud View on GitHub
area/datatypes kind/bug
Dominant language
Python
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Description

Its possible to upload a vcf.gz file (e.g. see 19:) but if an attempt is made to use it (e.g. VCF-BedIntersect in main panel, 19: shows as (unavailable).

If an uncompressed vcf file is loaded (e.g. as 21:) there is no such issue (e.g. see 22: , 23:)

screenshot 2019-02-15 at 11 24 19

Best, Tim

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